Compute statistics (p-value for, Welch, Wilcoxon, Kruskal, ANOVA test) for C-score based on condition column

Compute statistics (p-value for, Welch, Wilcoxon, Kruskal, ANOVA test) for C-score based on condition column

Usage

compute_pval(ribo = ribo, test = NULL, condition_col = NULL)

Arguments

ribo

a RiboClass object

test

statistic test wanted student, anova or kruskal

condition_col

column condition in metadata

Value

a dataframe

Examples

data("ribo_toy")
compute_pval(ribo = ribo_toy, test = "student", condition_col = "condition")
#> Site  ignored : doesn't have at least 2 replicats.
#> Warning: There was 1 warning in `dplyr::summarise()`.
#> ℹ In argument: `p_value = { ... }`.
#> Caused by warning:
#> ! Unknown or uninitialised column: `annotated_sites`.
#> # A tibble: 0 × 4
#> # ℹ 4 variables: annotated_sites <chr>, p_value <dbl>, delta_c_score <dbl>,
#> #   p_adj <dbl>