Changelog

Source: NEWS.md

rRMSAnalyzer 2.0.1

New feature

• get_annotation(): get a dataframe with all current annotation in a RiboClass.

• remove_annotation(): Added a new parameter to select a subset of annotation to remove.

rRMSAnalyzer 2.0.0

• Added a NEWS.md file to track changes to the package.

Breaking change

• plot_PCA()has been renamed to plot_pca().

New features

Plots

• Correspondence analysis for samples’ counts : plot_coa()
• Heatmaps: plot_heatmap() and plot_heatmap_corr()
• “Simple” boxplots : boxplot_count() (by sample) and boxplot_cscores() (by site)
• Boxplot comparing c-score by condition for sites considered as differential plot_diff_sites()
• And others: plot_counts_env(), plot_counts_fraction()…

Error messages

• Error messages are now using Cli package for better clarity

• More error messages to help the users

Bugfixes & improvements

• compute_cscore() has drastically been improved in terms of performance

rRMSAnalyzer 1.0.0

First public version of rRMSAnalyzer 🥳 !

New features

Only main features will be shown here :

• C-score computation for all positions (compute_cscore())

• Technical biases adjustment with CombatSeq (adjust_bias())

• Principal Component Analysis (plot_PCA())