Get annotation of a RiboClass
Examples
data("ribo_toy")
data("human_methylated")
ribo_toy <- rename_rna(ribo_toy)
ribo_toy <- annotate_site(ribo_toy,human_methylated)
get_annotation(ribo_toy)
#> rnapos rna site
#> 1 28 18S 18S_Am27
#> 2 100 18S 18S_Am99
#> 3 117 18S 18S_Um116
#> 4 122 18S 18S_Um121
#> 5 160 18S 18S_Am159
#> 6 167 18S 18S_Am166
#> 7 173 18S 18S_Um172
#> 8 175 18S 18S_Cm174
#> 9 355 18S 18S_Um354
#> 10 429 18S 18S_Um428
#> 11 437 18S 18S_Gm436
#> 12 463 18S 18S_Cm462
#> 13 469 18S 18S_Am468
#> 14 485 18S 18S_Am484
#> 15 510 18S 18S_Gm509
#> 16 513 18S 18S_Am512
#> 17 518 18S 18S_Cm517
#> 18 577 18S 18S_Am576
#> 19 591 18S 18S_Am590
#> 20 602 18S 18S_Gm601
#> 21 622 18S 18S_Cm621
#> 22 628 18S 18S_Um627
#> 23 645 18S 18S_Gm644
#> 24 669 18S 18S_Am668
#> 25 684 18S 18S_Gm683
#> 26 798 18S 18S_Cm797
#> 27 800 18S 18S_Um799
#> 28 868 18S 18S_Gm867
#> 29 1032 18S 18S_Am1031
#> 30 1273 18S 18S_Cm1272
#> 31 1289 18S 18S_Um1288
#> 32 1327 18S 18S_Um1326
#> 33 1329 18S 18S_Gm1328
#> 34 1384 18S 18S_Am1383
#> 35 1392 18S 18S_Cm1391
#> 36 1443 18S 18S_Um1442
#> 37 1448 18S 18S_Gm1447
#> 38 1491 18S 18S_Gm1490
#> 39 1669 18S 18S_Um1668
#> 40 1679 18S 18S_Am1678
#> 41 1704 18S 18S_Cm1703
#> 42 1805 18S 18S_Um1804
#> 43 399 28S 28S_Am389
#> 44 401 28S 28S_Am391
#> 45 1317 28S 28S_Gm1303
#> 46 1324 28S 28S_Am1310
#> 47 1327 28S 28S_Am1313
#> 48 1341 28S 28S_Cm1327
#> 49 1523 28S 28S_Gm1509
#> 50 1525 28S 28S_Am1511
#> 51 1535 28S 28S_Am1521
#> 52 1626 28S 28S_Gm1612
#> 53 1761 28S 28S_Gm1747
#> 54 1774 28S 28S_Um1760
#> 55 1872 28S 28S_Am1858
#> 56 1882 28S 28S_Cm1868
#> 57 2352 28S 28S_Cm2338
#> 58 2364 28S 28S_Am2350
#> 59 2365 28S 28S_Gm2351
#> 60 2366 28S 28S_Cm2352
#> 61 2402 28S 28S_Am2388
#> 62 2416 28S 28S_Um2402
#> 63 2423 28S 28S_Cm2409
#> 64 2425 28S 28S_Gm2411
#> 65 2788 28S 28S_Am2774
#> 66 2805 28S 28S_Cm2791
#> 67 2816 28S 28S_Am2802
#> 68 2825 28S 28S_Cm2811
#> 69 2838 28S 28S_Um2824
#> 70 2862 28S 28S_Cm2848
#> 71 2877 28S 28S_Gm2863
#> 72 3628 28S 28S_Gm3606
#> 73 3702 28S 28S_Cm3680
#> 74 3719 28S 28S_Am3697
#> 75 3725 28S 28S_Am3703
#> 76 3745 28S 28S_Gm3723
#> 77 3761 28S 28S_Am3739
#> 78 3786 28S 28S_Am3764
#> 79 3793 28S 28S_Gm3771
#> 80 3809 28S 28S_Cm3787
#> 81 3819 28S 28S_Um3797
#> 82 3826 28S 28S_Am3804
#> 83 3831 28S 28S_Am3809
#> 84 3842 28S 28S_Cm3820
#> 85 3868 28S 28S_Am3846
#> 86 3870 28S 28S_Cm3848
#> 87 3888 28S 28S_Cm3866
#> 88 3900 28S 28S_Gm3878
#> 89 3926 28S 28S_Um3904
#> 90 3945 28S 28S_Gm3923
#> 91 4043 28S 28S_Gm4020
#> 92 4055 28S 28S_Cm4032
#> 93 4197 28S 28S_Gm4166
#> 94 4228 28S 28S_Um4197
#> 95 4229 28S 28S_Gm4198
#> 96 4307 28S 28S_Um4276
#> 97 4371 28S 28S_Gm4340
#> 98 4393 28S 28S_Gm4362
#> 99 4457 28S 28S_Cm4426
#> 100 4495 28S 28S_Gm4464
#> 101 4499 28S 28S_Um4468
#> 102 4500 28S 28S_Gm4469
#> 103 4524 28S 28S_Am4493
#> 104 4537 28S 28S_Cm4506
#> 105 4572 28S 28S_Am4541
#> 106 4591 28S 28S_Am4560
#> 107 4619 28S 28S_Gm4588
#> 108 4621 28S 28S_Um4590
#> 109 4624 28S 28S_Gm4593
#> 110 4638 28S 28S_Gm4607
#> 111 15 5.8S 5.8S_Um14
#> 112 76 5.8S 5.8S_Gm75