Skip to contents

Plot counts for a given position on a given RNA

Source: R/plot_counts.R
plot_counts_env.Rd

Plot counts for a given position on a given RNA

Usage

plot_counts_env(
  ribo = NULL,
  rna = NULL,
  pos = NULL,
  samples = "all",
  flanking = 6,
  condition = NULL
)

Arguments

ribo

A RiboClass object

rna

Name of RNA where the position is located

pos

Position on RNA on which the view will be centered

samples

Samples to display. "all" will display all samples.

flanking

Number of sites to display on the left/right of the selected position.

Value

A ggplot object

Examples

data("ribo_toy")
ribo_toy <- rename_rna(ribo = ribo_toy)
plot_counts_env(ribo = ribo_toy, rna = "5.8S", pos = 15)