Plot IQR or variance per site — plot_sites_by_IQR • rRMSAnalyzer

The sites that show an IQR/variance higher than median + 2*MAD are colored in red and are considered as the most variant sites.

Usage

plot_sites_by_IQR(ribo = NULL, plot = "IQR", variance = "IQR", ...)

Arguments

ribo: A ribo class object containing the data
plot: Type of plot: "IQR" (default) or "boxplot"
variance: Metric to visualize: "IQR" (default) or "var" (variance)
...: Additional theme arguments for ggplot

Value

A ggplot object

Examples

data("ribo_toy")
data("human_methylated")
ribo_toy <- rename_rna(ribo_toy)
ribo_toy <- annotate_site(ribo_toy,human_methylated)
plot_sites_by_IQR(ribo = ribo_toy, plot = "IQR")